Publications: Theoretical Biology / Bioinformatics Group, Utrecht University 2005

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Publications: 2005

Theoretical Biology / Bioinformatics Group, Utrecht University

Clayton R.H., Zhuchkova E.A. & Panfilov A.V. (2006).: Phase singularities and filaments: Simplifying complexity in computational models of ventricular fibrillation.
Prog. Biophys. Mol. Biol., 90: 378-398. MEDLINE. DownLoad PDF.
De Boer R.J. & Perelson A.S. (2005).: Estimating division and death rates from CFSE data.
J. Comp. Appl. Math., 184: 140-164. DownLoad PDF.
Dowling M.R., Milutinovic D. & Hodgkin P.D. (2005).: Modelling cell lifespan and proliferation: is likelihood to die or to divide independent of age?
J. R. Soc. Interface, 2: 517-526.
Ganusov V.V., Pilyugin S.S., De Boer R.J., Murali-Krishna K., Ahmed R. & Antia R. (2005).: Quantifying cell turnover using CFSE data.
J. Immunol. Methods, 298: 183-200. MEDLINE. DownLoad PDF.
Groenenboom M.A., Maree A.F. & Hogeweg P. (2005).: The RNA silencing pathway: the bits and pieces that matter.
PLoS. Comput. Biol., 1: 155-165. MEDLINE. DownLoad PDF.
Han B., Serra P., Amrani A., Yamanouchi J., Maree A.F., Edelstein-Keshet L. & Santamaria P. (2005).: Prevention of diabetes by manipulation of anti-IGRP autoimmunity: high efficiency of a low-affinity peptide.
Nat. Med., 11: 645-652. MEDLINE. DownLoad PDF.
Hogeweg P. (2005a).: Interlocking of selforganization and evolution.
In: Hemelrijk C.K., ed., Self-organization and evolution of Social Systems, pp. 166-189. Cambridge Univ press.
Hogeweg P. (2005b).: Multilevel particle systems and the study of biological evolution.
Markov processes and related fields, 11: 291-312.
Luciani F., Kesmir C., Mishto M., Or-Guil M. & De Boer R.J. ( 2005).: A mathematical model of protein degradation by the proteasome.
Biophys. J., 88: 2422-2432. MEDLINE. DownLoad PDF.
Lund O., Nielsen M., Lundegaard C., Kesmir C. & Brunak S. (2005).: Immunological bioinformatics.
MIT Press, Cambridge, Mass.
Maree A.F., Komba M., Dyck C., Labecki M., Finegood D.T. & Edelstein-Keshet L. (2005).: Quantifying macrophage defects in type 1 diabetes.
J. theor. Biol., 233: 533-551. MEDLINE. DownLoad PDF.
Nielsen M., Lundegaard C., Lund O. & Kesmir C. (2005).: The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage.
Immunogenetics., 57: 33-41. MEDLINE. DownLoad PDF.
Panfilov A.V., Keldermann R.H. & Nash M.P. (2005).: Self-organized pacemakers in a coupled reaction-diffusion-mechanics system.
Phys. Rev. Lett, 95: 258104/1-258104/4.
Rusakov A., Medvinsky A.B. & Panfilov A.V. (2005).: Scroll waves meandering in a model of an excitable medium.
Phys. Rev. E, 72: 022902. MEDLINE. DownLoad PDF.
Takeuchi N., Poorthuis P.H. & Hogeweg P. (2005).: Phenotypic error threshold; additivity and epistasis in RNA evolution.
BMC. Evol. Biol., 5: 9. MEDLINE. DownLoad PDF.
Ten Tusscher K.H., Noble D., Noble P.J. & Panfilov A.V. (2005).: Comments on "A model for human ventricular tissue".
Am.J.Physiol, 288: 253-254.
Ten Tusscher K.H. & Panfilov A.V. (2005).: Wave propagation in excitable media with randomly distributed obstacles.
SIAM Journal of Multiscale Modeling & Simulation, 3: 265-282.