Publications: Theoretical Biology / Bioinformatics Group, Utrecht University 2004

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Publications: 2004

Theoretical Biology / Bioinformatics Group, Utrecht University

Borghans J.A.M., Beltman J.B. & De Boer R.J. (2004).: MHC polymorphism under host-pathogen coevolution.
Immunogenetics., 55: 732-739. MEDLINE. DownLoad PDF.
Burroughs N.J., De Boer R.J. & Kesmir C. (2004).: Discriminating self from nonself with short peptides from large proteomes.
Immunogenetics., 56: 311-320. MEDLINE. DownLoad PDF.
De Boer R.J., Borghans J.A., Van Boven M., Kesmir C. & Weissing F.J. (2004).: Heterozygote advantage fails to explain the high degree of polymorphism of the MHC.
Immunogenetics., 55: 725-731. MEDLINE. DownLoad PDF.
Hazenberg M.D., Otto S.A., Van Rossum A.M., Scherpbier H.J., De Groot R., Kuijpers T.W., Lange J.M., Hamann D., De Boer R.J., Borghans J.A. & Miedema F. (2004).: Establishment of the CD4+ T-cell pool in healthy children and untreated children infected with HIV-1.
Blood, 104: 3513-3519. MEDLINE. DownLoad PDF.
Lund O., Nielsen M., Kesmir C., Petersen A.G., Lundegaard C., Worning P., Sylvester-Hvid C., Lamberth K., Roder G., Justesen S., Buus S. & Brunak S. (2004).: Definition of supertypes for HLA molecules using clustering of specificity matrices.
Immunogenetics, 55: 797-810. MEDLINE. DownLoad PDF.
Nash M.P. & Panfilov A.V. (2004).: Electromechanical model of excitable tissue to study reentrant cardiac arrhythmias.
Prog. Biophys. Mol. Biol., 85: 501-522. MEDLINE. DownLoad PDF.
Nobile M., Correa R., Borghans J.A., D'Agostino C., Schneider P., De Boer R.J. & Pantaleo G. (2004).: De novo T-cell generation in patients at different ages and stages of HIV-1 disease.
Blood, 104: 470-477. MEDLINE. DownLoad PDF.
Panfilov A.V. & Kerkhof P.L.M. (2004).: Quantifying ventricular fibrillation: in silico research and clinical implications.
IEEE Trans. Biomed. Eng, 51: 195-196. MEDLINE.
Saxova P., Buus S. & Kesmir C. (2004).: Integrating proteasome and MHC predictions for better identification of CTL epitopes.
In: Hansen J.A. & Dupont B., eds., HLA 2004: Immunobiology of the human MHC. Proceedings of the 13th International Histocompatibility Workshop and Congress, pp. 45-51. IHWG Press, Seattle, WA.
Scherer A., Noest A. & De Boer R.J. (2004).: Activation-threshold tuning in an affinity model for the T-cell repertoire.
Proc. R. Soc. Lond. B. Biol. Sci., 271: 609-616. MEDLINE. DownLoad PDF.
Ten Tusscher K.H., Noble D., Noble P.J. & Panfilov A.V. (2004).: A model for human ventricular tissue.
Am.J.Physiol., 286: 1573-1589. MEDLINE. DownLoad PDF.
Ten Tusscher K.H. & Panfilov A.V. (2004).: Eikonal formulation of the minimal principle for scroll wave filaments.
Phys. Rev. Lett, 93: 108106. MEDLINE. DownLoad PDF.
Van der Post D.J. & Hogeweg P. (2004).: Learning what to eat: Studying inter-relations between learning, grouping and evironmental conditions in an artificial world.
LNCS, 3305: 492-501. DownLoad PDF.