1 #ifndef VIENNA_RNA_PACKAGE_CENTROID_H 2 #define VIENNA_RNA_PACKAGE_CENTROID_H 7 #ifdef VRNA_WARN_DEPRECATED 9 # define DEPRECATED(func) func __attribute__ ((deprecated)) 11 # define DEPRECATED(func) func 14 # define DEPRECATED(func) func 18 #define VRNA_BACKWARD_COMPAT 82 #ifdef VRNA_BACKWARD_COMPAT char * vrna_centroid_from_probs(int length, double *dist, FLT_OR_DBL *probs)
Get the centroid structure of the ensemble.
char * vrna_centroid(vrna_fold_compound_t *vc, double *dist)
Get the centroid structure of the ensemble.
char * get_centroid_struct_pl(int length, double *dist, vrna_ep_t *pl)
Get the centroid structure of the ensemble.
Data structure representing a single entry of an element probability list (e.g. list of pair probabil...
Definition: structure_utils.h:115
double FLT_OR_DBL
Typename for floating point number in partition function computations.
Definition: data_structures.h:43
The most basic data structure required by many functions throughout the RNAlib.
Definition: fold_compound.h:130
char * vrna_centroid_from_plist(int length, double *dist, vrna_ep_t *pl)
Get the centroid structure of the ensemble.
Various data structures and pre-processor macros.
Various utility- and helper-functions for secondary structure parsing, converting, etc.
char * get_centroid_struct_pr(int length, double *dist, FLT_OR_DBL *pr)
Get the centroid structure of the ensemble.
FLT_OR_DBL * pr
A pointer to the base pair probability matrix.