RNAlib-2.4.3
profiledist.h
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1 #ifndef VIENNA_RNA_PACKAGE_PROFILEDIST_H
2 #define VIENNA_RNA_PACKAGE_PROFILEDIST_H
3 
4 #ifdef VRNA_WARN_DEPRECATED
5 # ifdef __GNUC__
6 # define DEPRECATED(func) func __attribute__ ((deprecated))
7 # else
8 # define DEPRECATED(func) func
9 # endif
10 #else
11 # define DEPRECATED(func) func
12 #endif
13 
15 
24 float profile_edit_distance(const float *T1,
25  const float *T2);
26 
27 
38 float *Make_bp_profile_bppm(FLT_OR_DBL *bppm,
39  int length);
40 
41 
45 void print_bppm(const float *T);
46 
47 
53 void free_profile(float *T);
54 
55 
64 DEPRECATED(float *Make_bp_profile(int length));
65 
66 #endif
float profile_edit_distance(const float *T1, const float *T2)
Align the 2 probability profiles T1, T2 .
void free_profile(float *T)
free space allocated in Make_bp_profile
double FLT_OR_DBL
Typename for floating point number in partition function computations.
Definition: data_structures.h:43
Various data structures and pre-processor macros.
float * Make_bp_profile_bppm(FLT_OR_DBL *bppm, int length)
condense pair probability matrix into a vector containing probabilities for unpaired, upstream paired and downstream paired.
float * Make_bp_profile(int length)
void print_bppm(const float *T)
print string representation of probability profile