RNAlib-2.4.3
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Parse and apply different commands that alter the behavior of secondary structure prediction and evaluation. More...
Go to the source code of this file.
Data Structures | |
struct | vrna_command_s |
List element for commands ready for application to a vrna_fold_compound_t. More... | |
Macros | |
#define | VRNA_CMD_PARSE_HC 1U |
Command parse/apply flag indicating hard constraints. More... | |
#define | VRNA_CMD_PARSE_SC 2U |
Command parse/apply flag indicating soft constraints. More... | |
#define | VRNA_CMD_PARSE_UD 4U |
Command parse/apply flag indicating unstructured domains. More... | |
#define | VRNA_CMD_PARSE_SD 8U |
Command parse/apply flag indicating structured domains. More... | |
#define | VRNA_CMD_PARSE_DEFAULTS |
Command parse/apply flag indicating default set of commands. More... | |
Typedefs | |
typedef struct vrna_command_s | vrna_cmd_t |
Typename for the command repesenting data structure vrna_command_s. | |
Enumerations | |
enum | vrna_command_e |
Types of commands within a list of vrna_command_s structures. | |
Functions | |
vrna_cmd_t * | vrna_file_commands_read (const char *filename, unsigned int options) |
Extract a list of commands from a command file. More... | |
int | vrna_file_commands_apply (vrna_fold_compound_t *vc, const char *filename, unsigned int options) |
Apply a list of commands from a command file. More... | |
int | vrna_commands_apply (vrna_fold_compound_t *vc, vrna_cmd_t *commands, unsigned int options) |
Apply a list of commands to a vrna_fold_compound_t. More... | |
void | vrna_commands_free (vrna_cmd_t *commands) |
Free memory occupied by a list of commands. More... | |
Parse and apply different commands that alter the behavior of secondary structure prediction and evaluation.