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sheets (when available)

TBB: Computational Biology 2016-2017

Daily Sheets


  • 14-11-16 Introduction: models and modelformalisms: CA

  • 15-11-16 Model formalisms, continued; CA, ODE

  • 17-11-16 Networks, gene regulation (neural networks)

  • 22-11-16 Spots and Stripes: Turing patterns (Kirsten ten Tusscher)

  • 24-11-16 Event based modeling & Multilevel modeling in CA

  • 29-11-16 Prebiotic evolution: replicator systems and information threshold

  • 01-12-16 Prebiotic evolution: Circumventing Information threshold(?) emergence of higher levels of selection

  • 05-12-16 Eco-evolutionary dynamics: interlocking timescales

  • 06-12-16 Eco-evolutionary dynamics: multilevel evolution vesicles vs mesoscale patterns

  • 08-12-16 Non linear genotype-phenotype mapping: RNA landscapes

  • 13-12-16 Evolution of genotype-phenotype mapping

  • 15-12-16 RNA world: sequence - structure - interactions; Evolution of GP mapping continued: U-shape

  • 20-12-16 Genome evolution: coding structures and evolvability

  • 22-12-16 Metabolic networks how to cope with complexity of 'real' organisms
    --------------- Metagenomics (Bas Dutilh)

  • 10-01-17 Coping with variable environments evolution, regulation, stochasticity

  • 12-01-17 Individual based models: TODO and what is done
    --------------- Preventing genome deterioration by DUPDELS (Sandro Colizzi)

  • 17-01-17 Modeling developpment (1) pattern formation (stripes)
    --------------- evolution of developmental mechanisms (stripes)

  • 19-01-17 Bringing shape into development: Arabidopsis root
    --------------- Modeling morphogenesis ss: cell movement and Dictyostelium

  • 24-01-17 Modeling Biocomplexit: overview - review