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sheets (when available)

TBB: Computational Biology 2015-2016

Daily Sheets


  • 13-11-17 Introduction: models and modelformalisms: CA

  • 14-11-17 modelformalisms: continued: CA and ODE

  • 16-11-17 network models (gene regulation)

  • 21-11-17 , event based models and multilevel modeling (CPM)

  • 19-11-17 Prebiotic evolution, replicator equation, Information Threshold

  • 24-11-17 Circumventing the information threshold? Emergence of higher levels of selectio

  • 30-11-17 Multilevel evolution: emergent pattern vs vesicles

  • 04-12-17 Interlocking timescales

  • 05-12-17 Non-linear genotype-phenotype map: RNA landscapes

  • 07-12-17 Non-linear genotype-phenotype map: evolution of robustness and evolvability

  • 12-12-17 RNA world sequence, structures, interactions evolution of coding

  • 14-12-17 Genome evolution: coping with high mutation rates and the evolution of evolvability

  • 19-12-17 Coping with variable environments: evolvability and regulation

  • 21-12-17 Virtual Microbes: a non-supervised modeling approach + The evolution of differential rates of Horizontal Gene Transfer

  • 21-12-17 De novo evolved Virtual Microbes: Replaying life's tape

  • 09-01-18 Metabolic regulation in Yeast and E.coli Using Evolution to understand genome structure and transcription regulation

  • 09-01-18 Metabolism only: FBA and genome reduction after WGD

  • 11-01-18 Individual based modeling: TODO and what is done