recent computational, experimental and phylogenetic results
related to topics discussed in the course
Get an overview of the papers and choose one topic for presentation and one topic for discussion
NOTE: be critical: inclusion does not guarantee ‘good’
ECO-EVOLUTIONARY DYNAMICS: DIVERSITY
Rapid bacteria-phage coevolution drives the emergence of multiscale networks
Competition-driven eco-evolutionary feedback reshapes bacteriophage lambda's fitness landscape and enables speciation
MB Doud, A Gupta, V Li, SJ Medina… - Nature …, 2024 - nature.com
Rediversification following ecotype isolation reveals hidden adaptive potential
EVOLUTION ON/OF COMPLEX FITNESS LANDSCAPES
A rugged yet easily navigable fitness landscape
Genetic complementation fosters evolvability in complex fitness landscapes
E Segredo-Otero, R Sanjuán - Scientific Reports, 2023 - nature.com
Complexity and self-organization in the evolution of cell polarization
MM Glazenburg, L Laan - Journal of cell science, 2023 - journals.biologists.com
EVOLVABILITY IN CHANGING ENVIRONMENTS
Rapid evolution of mutation rate and spectrum in response to environmental and population-genetic challenges
…, MG Behringer, SF Miller, G Bcharah, M Lynch - Nature …, 2022 - nature.com
Fluctuating environments promote evolvability by shaping adaptive variation accessible to population
Evolvability-enhancing mutations in the fitness landscapes of an RNA and a protein
A Wagner - Nature Communications, 2023 - nature.com
The immediate effects of polyploidization of Spirodela polyrhiza change in a strain-specific way along environmental gradients
…, T Wu, A Natran, O De Clerck, Y Van de Peer - Evolution …, 2023 - academic.oup.com
GENOTYPE PHENOTYPE MAPS AND EVOLUTIONARY OUTCOMES
Non-Poissonian bursts in the arrival of phenotypic variation can strongly affect the dynamics of adaptation
Symmetry and simplicity spontaneously emerge from the algorithmic nature of evolution
IG Johnston, K Dingle, SF Greenbury… - Proceedings of the …, 2022 - National Acad Sciences
EVOLUTIONARY IMPACT OF LARGE SCALE DUPLICATIONS
The duplication of genomes and genetic networks and its potential for evolutionary adaptation and survival during environmental turmoil
…, D Bonte, Y Van de Peer - Proceedings of the …, 2023 - National Acad Sciences
(+ Duplicated gene networks promote 'hopeful'phenotypic variationC Parisod - Trends in Genetics, 2024 - cell.com)
Forward‐in‐time simulation of chromosomal rearrangements: The invisible backbone that sustains long‐term adaptation
EVOLUTION OF MULTICELLULARITY
[HTML] De novo evolution of macroscopic multicellularity
Proteostatic tuning underpins the evolution of novel multicellular traits
Evolution of selfish multicellularity: collective organisation of individual spatio-temporal regulatory strategies
RMA Vroomans, ES Colizzi - BMC Ecology and Evolution, 2023 - Springer
DEVELOPMENT
Developmental hourglass: Verification by numerical evolution and elucidation by dynamical-systems theory
…, S Kuratanai, K Kaneko - PLOS Computational …, 2024 - journals.plos.org
(+ Single-cell phylotranscriptomics of developmental and cell type evolutionF Ma, C Zheng - Trends in Genetics, 2024 - cell.com)