Alex N. Nguyen Ba1,9, Ivana Cvijović1,2,3,4,9, José I. Rojas Echenique1,9, Katherine R. Lawrence1,5,
Artur Rego-Costa1, X Liu, SF Levy, MM Desai - Nature, 2019 - nature.com

Consumer-resource dynamics is an eco-evolutionary process in a natural plankton community

LR Schaffner, L Govaert, L De Meester… - Nature ecology & …, 2019 - nature.com

…, MM Turcotte, JM Levine - Proceedings of the …, 2019 - National Acad Sciences

Simulated evolution assembles more realistic food webs with more functionally similar species than invasion

TN Romanuk, A Binzer, N Loeuille, WMA Carscallen… - Scientific Reports, 2019 - nature.com

2 Feedback of Spatial selforganization to cellular differentiation

Cooperation and spatial self-organization determine rate and efficiency of particulate organic matter degradation in marine bacteria

…, J Schwartzman, OX Cordero - Proceedings of the …, 2019 - National Acad Sciences

An evolutionarily stable strategy to colonize spatially extended habitats

W Liu, J Cremer, D Li, T Hwa, C Liu - Nature, 2019 - nature.com

Toxin production spontaneously becomes regulated by local cell density in evolving bacterial populations,

H Doekes RJ De Boer, R Hermsen - PLoS computational …, 2019 - journals.plos.org

3 Fitness Landscapes

Genotype network intersections promote evolutionary innovation

DP Bendixsen, J Collet, B Østman, EJ Hayden - PLoS biology, 2019 - journals.plos.org

Distribution of fitness effects of mutations obtained from a simple genetic regulatory network model

RG Brajesh, D Dutta, S Saini - Scientific reports, 2019 - nature.com

Evolution rapidly optimizes stability and aggregation in lattice proteins despite pervasive landscape valleys and mazes

J Bertram, J Masel - bioRxiv, 2019 - biorxiv.org

4 Short term vs long term evolution

Transcriptional mutagenesis prevents ribosomal DNA deterioration: The Role of Duplications and Deletions

ES Colizzi P hogeweg - Genome biology and evolution, 2019 - academic.oup.com

Fluctuating environments select for short-term phenotypic variation leading to long-term exploration

R Canino-Koning, MJ Wiser, C Ofria - PLoS computational biology, 2019 - journals.plos.org

Adapting in larger numbers can increase the vulnerability of Escherichia coli populations to environmental changes

Y Chavhan, S Karve, S Dey - Evolution, 2019 - Wiley Online Library

5 Mutational Bias, and predictability of evolution

Predicting mutational routes to new adaptive phenotypes

PA Lind, E Libby, J Herzog, PB Rainey - Elife, 2019 - cdn.elifesciences.org

Antibiotic production is organized by a division of labour in Streptomyces

…, A Liakopoulos, YH Choi, D Claessen, D Rozen - bioRxiv, 2019 - biorxiv.org

DNA fragility in the parallel evolution of pelvic reduction in stickleback fish

KT Xie, G Wang, AC Thompson… - …, 2019 - science.sciencemag.org

6 RNA sequence, structure and regulation in present day organisms

RNA structure duplication in the dengue virus 3′ UTR: redundancy or host specificity?

L de Borba, SM Villordo, FL Marsico, JM Carballeda… - MBio, 2019 - Am Soc Microbiol

Emerging roles for intermolecular RNA-RNA interactions in RNP assemblies

B Van Treeck, R Parker - Cell, 2018 - Elsevier

RNA-mediated gene regulation is less evolvable than transcriptional regulation

JL Payne, F Khalid, A Wagner - Proceedings of the …, 2018 - National Acad Sciences

7 Multilevel modeling of cell differentiation

Metabolic reprogramming dynamics in tumor spheroids: Insights from a multicellular, multiscale model

M Roy, SD Finley - PLoS computational biology, 2019 -

Role of aggregate size, multistability and communication in determining cell fate and patterning in M. xanthus

JAA Del Angel, N Rivera-Yoshida, AE Escalante… - bioRxiv, 2019

High-resolution lineage tracking reveals travelling wave of adaptation in laboratory yeast